PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_137340_fcae.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HD-ZIP
Protein Properties Length: 281aa    MW: 31380.4 Da    PI: 7.8118
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_137340_fcae.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.5e-19125179256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tk+q   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Bv6_137340_fcae.t1 125 RKKLRLTKDQSALLEESFKQQSTLNPKQKQALADRLNLRPRQVEVWFQNRRARTK 179
                         78889************************************************98 PP

2HD-ZIP_I/II123.97.3e-40125214191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+k+q++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  Bv6_137340_fcae.t1 125 RKKLRLTKDQSALLEESFKQQSTLNPKQKQALADRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTDENRRLQKELQELK-AL 214
                         69*************************************************************************************9.44 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-18107179IPR009057Homeodomain-like
SuperFamilySSF466892.69E-18113182IPR009057Homeodomain-like
PROSITE profilePS5007117.232121181IPR001356Homeobox domain
SMARTSM003897.5E-16123185IPR001356Homeobox domain
CDDcd000861.55E-16124182No hitNo description
PfamPF000463.2E-16125179IPR001356Homeobox domain
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PfamPF021832.3E-10181215IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.7E-26181224IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVSPSVDQSL TLGLGFSSST KLSYHNPVNS KQAQMMGNDD EPSLTLSLSG ETYQTVDKKV  60
FVDHHHHQET TPPCSVSVAS SLSNVVSVKR ERETASSDDL ELERGSSRIS DEEEEDGCGP  120
TNTPRKKLRL TKDQSALLEE SFKQQSTLNP KQKQALADRL NLRPRQVEVW FQNRRARTKL  180
KQTEVDCEYL KKCCETLTDE NRRLQKELQE LKALKMGQPF YMHLPAATLT MCPSCERIGA  240
GVPIPGAPTH SSTPASKTPF TLGPSKSHFY PPQQIRPLLV D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181RRARTKLKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680788.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-76HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0J8CAL10.0A0A0J8CAL1_BETVU; Uncharacterized protein
STRINGPOPTR_0007s14590.13e-93(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-66HD-ZIP family protein